API for MSCquartets
Analyzing Gene Tree Quartets under the Multi-Species Coalescent
| Global functions | |
|---|---|
| BQinference | Man page Source code |
| HolmBonferroni | Man page |
| M0 | Man page Source code |
| MSCquartets | Man page |
| MSCquartets-package | Man page |
| NANUQ | Man page Source code |
| NANUQdist | Man page |
| QDC | Man page Source code |
| QDS | Man page Source code |
| T1density | Man page Source code |
| T3density | Man page Source code |
| TINNIK | Man page Source code |
| TINNIKdist | Man page |
| WQDC | Man page Source code |
| WQDCrecursive | Man page Source code |
| WQDS | Man page Source code |
| WQDSAdjustLengths | Man page Source code |
| allPerms | Man page |
| blobDistance | Man page |
| circHybOrders | Man page |
| collapseEdges | Man page |
| combineCycleResolutions | Man page |
| compatibleSplits | Man page |
| cutDensity | Man page |
| dataGeneTreeSample | Man page |
| dataPapioniniVanderpool | Man page |
| dataYeastRokas | Man page |
| erf | Source code |
| erf.inv | Source code |
| estimateEdgeLengths | Man page Source code |
| expNANUQCycleDist | Man page |
| expectedCFs | Man page Source code |
| expmodNANUQCycleDist | Man page |
| fitCycleOrders | Man page |
| initBquartets | Man page Source code |
| labelIntNodes | Man page Source code |
| nexusDist | Man page Source code |
| nodeGroups | Man page |
| ordersHeuristicmodNANUQ | Man page |
| pTableYeastRokas | Man page |
| powerDivStat | Man page Source code |
| pvalHist | Man page Source code |
| quartetBTinferencePlot | Man page |
| quartetCutMLE | Man page |
| quartetCutTest | Man page |
| quartetCutTestInd | Man page |
| quartetDist | Man page Source code |
| quartetNetworkDist | Man page Source code |
| quartetStarTest | Man page Source code |
| quartetStarTestInd | Man page Source code |
| quartetTable | Man page Source code |
| quartetTableCollapse | Man page Source code |
| quartetTableDominant | Man page Source code |
| quartetTableParallel | Man page Source code |
| quartetTablePrint | Man page |
| quartetTableResolved | Man page Source code |
| quartetTallyCpp | Man page Source code |
| quartetTestPlot | Man page Source code |
| quartetTreeErrorProb | Man page |
| quartetTreeTest | Man page |
| quartetTreeTestInd | Man page |
| quartetWeightedDist | Man page Source code |
| resolveCycle | Man page Source code |
| resolveLevel1 | Man page |
| simplexCoords | Man page |
| simplexLabels | Man page |
| simplexPoint | Man page |
| simplexPrepare | Man page Source code |
| simplexSegment | Man page |
| simplexText | Man page |
| sortQuartetTableRows | Man page Source code |
| suppressNetBinaryNodes | Man page Source code |
| tableHeleconiusMartin | Man page |
| tableHeliconiusMartin | Man page |
| tableLeopardusLescroart | Man page |
| taxonNames | Man page Source code |
| topDist | Man page Source code |
| treeFromSplits | Man page |
| treeOfBlobs | Man page |
