Files in NMproject

Script Based 'NONMEM' Model Development

NEWS.md README.md R/nmsave.R R/nm_tree.R R/prompt_overwrite.R R/boot.R R/input_data.R R/subroutine.R R/nm_diff.R R/job_stats.R R/basic-ctl-manipulation.R R/find-nonmem.R R/derived-data-prep.R R/low-level-ctl-handling-funs.R R/param-manipulate.R R/make_OCC_every_dose.R R/output_table.R R/with_temp_git_config.R R/nm_object.R R/ofv.R R/text.R R/NMproject-package.R R/apply_manual_edit.R R/deprecated.R R/covariate-explore.R R/decision.R R/nm-gettersetters.R R/Vectorize.R R/nm_read_table.R R/show-file.R R/stepwise-covariate.R R/run_nm.R R/read_ext.R R/post-run-summaries.R R/cache.R R/manual-edit.R R/nm_render.R R/developer-funs.R R/data_filter.R R/sim-diagnostics.R R/directory-management.R R/import-code.R R/system-hooks.R R/basic_methods.R R/todo.R R/addin-apps.R R/nm_tran.R R/update_parameters.R R/zzz.R R/make_project.R R/snippet_setup.R R/cran_note_handle.R R/check_installation.R R/shiny-apps.R R/monitoring.R R/init_funs.R R/NMproject-options.R R/dollar_input.R R/plot_iter.R R/psn_style_scm.R R/utils.R R/rmd_to_vignette.R inst/rmarkdown/templates/nm_log/skeleton/skeleton.Rmd inst/rmarkdown/templates/basic_boot/skeleton/skeleton.Rmd inst/rmarkdown/templates/basic_gof/skeleton/skeleton.Rmd inst/rmarkdown/templates/nm_general/skeleton/skeleton.Rmd inst/rmarkdown/templates/basic_ppc/skeleton/skeleton.Rmd inst/rmarkdown/templates/basic_vpc/skeleton/skeleton.Rmd inst/extdata/shiny/ui.R inst/extdata/shiny/server.R inst/extdata/examples/theopp/R/AUC.R inst/extdata/examples/theopp/Scripts/s05_advanced_usage.Rmd inst/extdata/examples/theopp/Scripts/s04_covariate_modelling.Rmd inst/extdata/examples/theopp/Scripts/basic_boot.Rmd inst/extdata/examples/theopp/Scripts/basic_ppc.Rmd inst/extdata/examples/theopp/Scripts/basic_gof.Rmd inst/extdata/examples/theopp/Scripts/s03_cov_demo_prep.Rmd inst/extdata/examples/theopp/Scripts/basic_vpc.Rmd inst/extdata/examples/theopp/Scripts/s02_model_log.Rmd inst/extdata/examples/theopp/Scripts/s01_make_data.Rmd inst/extdata/overwrite_behaviour/ui.R inst/extdata/overwrite_behaviour/server.R inst/extdata/code_library_shiny/ui.R inst/extdata/code_library_shiny/server.R inst/extdata/CodeLibrary/R/locf.R inst/extdata/CodeLibrary/R/covariate_summaries.R inst/extdata/CodeLibrary/R/convert.to.na.R inst/extdata/CodeLibrary/R/AUC.R inst/extdata/CodeLibrary/R/group.factor.R inst/extdata/CodeLibrary/R/gof_ggplot.R inst/extdata/CodeLibrary/R/snap.R inst/extdata/CodeLibrary/R/gof_xpose.R inst/extdata/CodeLibrary/R/rep_times.R inst/extdata/CodeLibrary/Scripts/deSolvePKsim.R inst/extdata/CodeLibrary/Scripts/BinomRegMeta.R inst/extdata/CodeLibrary/Scripts/theoppStan.R inst/templates/README.Rmd tests/testthat.R tests/testthat/test-manual_edit.R tests/testthat/test-child.R tests/testthat/test-subroutine.R tests/testthat/test-new_nm.R tests/testthat/test-basic.R tests/testthat/test-theopp.R tests/testthat/test-parse_dirs.R man/nonmem_code_to_r.Rd man/ofv.Rd man/plot_iter.Rd man/nm_row.Rd man/system_nm.Rd man/search_raw.Rd man/setup_code_completion.Rd man/coef_widelong.Rd man/NONMEM_version.Rd man/nm_diff.Rd man/cov_forest_plot.Rd man/valid_package_name.Rd man/nm_render.Rd man/fill_input.Rd man/status_table.Rd man/view_patch.Rd man/setup_nm_demo.Rd man/subroutine.Rd man/info_scripts.Rd man/insert_dollar.Rd man/git_hooks.Rd man/data_filter_char.Rd man/comment_lines.Rd man/grapes-f-greater-than-grapes.Rd man/reexports.Rd man/stage.Rd man/NMproject-package.Rd man/add_remove_covs.Rd man/system_nm_default.Rd man/job_stats.Rd man/boot_to_csv.Rd man/apply_manual_edit.Rd man/ctl_character.Rd man/write_ctl.Rd man/check_installation.Rd man/test_relations.Rd man/psn_available.Rd man/read_derived_data.Rd man/shiny_nm.Rd man/nm_create_analysis_project.Rd man/nm_summary.Rd man/append_nonmem_var.Rd man/make_xv_datasets.Rd man/gen_sim_path.Rd man/nm_output_path.Rd man/show_ctl.Rd man/cov_forest_data.Rd man/job_time_spacing.Rd man/start_manual_edit.Rd man/system_nm_available.Rd man/git_cmd_available.Rd man/nm_read_table.Rd man/temp_files.Rd man/ppc.Rd man/plot_iter_data.Rd man/is_finished.Rd man/psn_check.Rd man/dollar.Rd man/ctl_contents.Rd man/as_nm_list.Rd man/map_nm.Rd man/nm_tran_command.Rd man/exclude_rows.Rd man/ls_scripts.Rd man/covariate_step_tibble.Rd man/psn_style_scm.Rd man/completed_nm.Rd man/omega_matrix.Rd man/add_mixed_param.Rd man/block-omega-sigma.Rd man/rr.Rd man/covariance_plot.Rd man/kill_job.Rd man/simple_field.Rd man/nm_getsetters_execution.Rd man/dollar_subroutine.Rd man/nm_tree.Rd man/output_table.Rd man/plot_iter_dygraph.Rd man/code_library.Rd man/wait_finish.Rd man/is_full_path.Rd man/import.Rd man/job_info.Rd man/rmd_to_vignettes.Rd man/parent_run.Rd man/init_theta.Rd man/run_nm.Rd man/update_parameters.Rd man/cond_num.Rd man/make_boot_datasets.Rd man/new_nm.Rd man/system_nm_intern.Rd man/data_path.Rd man/nm_dir.Rd man/change_parent.Rd man/remove_parameter.Rd man/bind_covariate_results.Rd man/nm_getsetters.Rd man/status.Rd man/based_on.Rd man/covariance_matrix.Rd man/show_out.Rd man/nm_output.Rd man/plot_iter_ggplot.Rd man/parallel_execute.Rd man/pipe.Rd man/as_nm_generic.Rd man/wait_for.Rd man/make_OCC_every_dose.Rd man/ctl_list.Rd man/run_nm_single.Rd man/wipe_run.Rd man/cov_cov_plot.Rd man/nm_default_dirs.Rd man/write_derived_data.Rd man/run_dir_path.Rd man/is_successful.Rd man/ctl_path.Rd man/data_ignore_char.Rd man/list_dirs.Rd man/input_data.Rd man/relative_path.Rd man/rename_parameter.Rd man/delete_dollar.Rd man/run_all_scripts.Rd man/is_nmproject_dir.Rd man/nmsave.Rd man/decision.Rd man/is_nm.Rd man/target.Rd man/param_cov_diag.Rd man/tail_lst.Rd man/nm.Rd man/gsub_ctl.Rd man/nm_default_fields.Rd man/sge_parallel_execute.Rd man/is_rstudio.Rd man/ignore.Rd man/ls_code_library.Rd man/system_cmd.Rd man/nm_tran.Rd man/overwrite_behaviour.Rd man/convert_to_simulation.Rd man/child.Rd man/find_nonmem.Rd man/nm_list_gather.Rd man/figures/NMproject_logo.R