QuantumClone: Clustering Mutations using High Throughput Sequencing (HTS) Data
Version 1.0.0.6

Using HTS data, clusters mutations in order to recreate putative clones from the data provided. It requires genotype at the location of the variant as well as the depth of coverage and number of reads supporting the mutation. Additional information may be provided, such as the contamination in the tumor sample. This package also provides a function QuantumCat() which simulates data obtained from tumor sequencing.

Package details

AuthorPaul Deveau [aut, cre]
Date of publication2017-11-13 10:25:32 UTC
MaintainerPaul Deveau <[email protected]>
LicenseGPL-2
Version1.0.0.6
URL https://github.com/DeveauP/QuantumClone
Package repositoryView on CRAN
Installation Install the latest version of this package by entering the following in R:
install.packages("QuantumClone")

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QuantumClone documentation built on Nov. 17, 2017, 5:24 a.m.