grzero: Gradient 0
In QuantumClone: Clustering Mutations using High Throughput Sequencing (HTS) Data
Description
Return center values for max if adj.factor has a single value for all variants/possibilities in each samples
Usage
1
grzero(fik, adj.factor, Alt, Depth)
Arguments
fik
matrix with probability of each possibility to belong to clone k
adj.factor
matrix with coefficient making transition between cellularity and frequency
Alt
matrix with samples in columns and number of alternative reads in rows
Depth
matrix with samples in coluns and depth of coverage in rows
QuantumClone documentation built on May 2, 2019, 3:03 a.m.
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Description
Return center values for max if adj.factor has a single value for all variants/possibilities in each samples
Usage
1 | grzero(fik, adj.factor, Alt, Depth)
|
Arguments
fik |
matrix with probability of each possibility to belong to clone k |
adj.factor |
matrix with coefficient making transition between cellularity and frequency |
Alt |
matrix with samples in columns and number of alternative reads in rows |
Depth |
matrix with samples in coluns and depth of coverage in rows |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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