FLASH_main: Flash core

Description Usage Arguments

View source: R/FlashQC.R

Description

Returns number of clusters based on model selection

Usage

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FLASH_main(Schrod_cells, model.selection, conta, Nclus, tree = NULL,
  dissimMatrix = NULL)

Arguments

Schrod_cells

Output from Schrodinger cellularities

model.selection

One of "tree", "AIC", "BIC" or numeric. "tree" will use "ccc","ch" and "gap" methods from NbClust to determine the number of clusters. "BIC","AIC" or numeric values will use methods from QuantumClone.

conta

vector with contamination fraction in each sample

Nclus

vector with the number of clusters to test (alternatively only min and max values)

tree

Hierarchical tree from hclust

dissimMatrix

Dissimilarity matrix, required if model selection is "tree"


QuantumClone documentation built on May 2, 2019, 3:03 a.m.