manual_plot_trees: Plot tree
In QuantumClone: Clustering Mutations using High Throughput Sequencing (HTS) Data

Creates a visual output for the phylogeny created by Tree_generation()

1	manual_plot_trees(connexion_list, d, cex = 0.8, p)

`connexion_list`	Data frame of the concatenation of the interaction matrix and the cellularity of each clone at different time points.
`d`	Number of clusters found by QuantumClone
`cex`	Coefficient of expansion for the texts in phylogenetic tree plots. Default is 0.8
`p`	Probability of a tree

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# Extract one tree out of the 3 available trees:
Example_tree<-QuantumClone::Tree[[1]]
manual_plot_trees(Example_tree[[1]], d= 4,p = Example_tree[[2]])