manual_plot_trees: Plot tree

Description Usage Arguments Examples

View source: R/plots.R

Description

Creates a visual output for the phylogeny created by Tree_generation()

Usage

1
manual_plot_trees(connexion_list, d, cex = 0.8, p)

Arguments

connexion_list

Data frame of the concatenation of the interaction matrix and the cellularity of each clone at different time points.

d

Number of clusters found by QuantumClone

cex

Coefficient of expansion for the texts in phylogenetic tree plots. Default is 0.8

p

Probability of a tree

Examples

1
2
3
# Extract one tree out of the 3 available trees:
Example_tree<-QuantumClone::Tree[[1]]
manual_plot_trees(Example_tree[[1]], d= 4,p = Example_tree[[2]])

QuantumClone documentation built on May 19, 2017, 6:28 p.m.

Search within the QuantumClone package
Search all R packages, documentation and source code

Questions? Problems? Suggestions? Tweet to @rdrrHQ or email at ian@mutexlabs.com.

Please suggest features or report bugs in the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.