API for QuantumClone
Clustering Mutations using High Throughput Sequencing (HTS) Data

Global functions
BIC_criterion Man page Source code
BIC_criterion_FLASH Man page Source code
Cellular_preclustering Man page Source code
CellularitiesFromFreq Man page Source code
Cluster_plot_from_cell Man page Source code
Compute.adj.fact Source code
Compute_NMI Man page Source code
Compute_objective Man page Source code
Create_prior_cutTree Man page Source code
EM.algo Man page Source code
EM_clustering Man page Source code
FLASH_main Man page Source code
FlashQC Man page Source code
From_freq_to_cell Man page Source code
FullEM Man page Source code
Input_Example Man page
MajorityVote Man page Source code
NMI_cutree Man page Source code
One_D_plot Man page Source code
One_step_clustering Man page Source code
Patient_schrodinger_cellularities Man page Source code
Precision_Recall Man page Source code
ProbDistMatrix Man page Source code
Probability.to.belong.to.clone Man page Source code
QC_output Man page
QuantumCat Man page Source code
QuantumClone Man page Source code
Tidy_output Man page Source code
Tree Man page
Tree_generation Man page Source code
add.to.list Source code
add_leaf_list Man page Source code
check_leaf Man page Source code
check_split Man page Source code
create_priors Man page Source code
e.step Man page Source code
eval.fik Source code
eval.fik.m Man page Source code
evolution_plot Man page Source code
filter_on_fik Man page Source code
find_x_position Man page Source code
grbase Man page
grzero Man page Source code
hard.clustering Man page Source code
is_included Man page Source code
list_prod Man page Source code
longueur Man page Source code
m.step Man page Source code
manual_plot_trees Man page Source code
multiplot_trees Man page Source code
parallelEM Man page Source code
phylo_tree_generation Man page Source code
plot_QC_out Man page Source code
plot_cell_from_Return_out Man page Source code
plot_with_margins_densities Man page Source code
strcount Man page Source code
update_probs Man page Source code
zscore Man page Source code
QuantumClone documentation built on Nov. 17, 2017, 5:24 a.m.