Tree_generation: Phylogenetic tree

Description Usage Arguments

View source: R/Phylogeny_tree.R

Description

Generates a list of possible trees based on the cellularity of each clone, and the spatial and temporal distribution of the samples. Assumption is made the different clones are on different lines of the matrix

Usage

1
Tree_generation(Clone_cellularities, timepoints = NULL)

Arguments

Clone_cellularities

A dataframe with cellularities (ranging from 0 to 1) of each clone (rows) in each sample (columns)

timepoints

A numeric vector giving the spatial and/or temporal distribution of the samples


QuantumClone documentation built on May 2, 2019, 3:03 a.m.