Description Usage Arguments Examples
Computes gradient of function
1 | grbase(fik, adj.factor, centers, Alt, Depth)
|
fik |
Evaluation of fik for previous iteration |
adj.factor |
Factor to compute the probability: makes transition between the cellularity of the clone and the frequency observed |
centers |
vector with cellularity of each clone (numeric vector, ordered by samples) |
Alt |
Matrix with number of draws in rows for a mutation/possibility, and samples in columns |
Depth |
Matrix with number of not draws (Depth - Alt) in rows for a mutation/possibility, and samples in columns |
1 2 3 4 5 6 |
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