Files in QuantumClone
Clustering Mutations using High Throughput Sequencing (HTS) Data

MD5
NAMESPACE
DESCRIPTION
tests/testthat.R tests/testthat/test-ProbBelClone.R tests/testthat/test-One_step_clustering.R tests/testthat/test-validations_tools.R tests/testthat/test-QuantumCat.R tests/testthat/test-FlashQC.R tests/testthat/test-gradienttools.R tests/testthat/test-plots.R
tests/reproducible_testing/Comparison_other_methods/Plots.zip
tests/reproducible_testing/Comparison_other_methods/Pipeline_test.zip
tests/reproducible_testing/Rscript/data.df
tests/reproducible_testing/Rscript/filtering_pipeline_PoC.Rmd tests/reproducible_testing/Rscript/parallelization.Rmd tests/reproducible_testing/Rscript/reproduce.R tests/reproducible_testing/Rscript/filtering_pipeline_PoC_2.Rmd tests/reproducible_testing/Rscript/filtering_pipeline_comp_time.Rmd tests/reproducible_testing/Rscript/reproduce_2.R tests/reproducible_testing/Rscript/optim_vs_optimx.R tests/reproducible_testing/Rscript/figure3.Rmd
tests/reproducible_testing/Rscript/html_outputs.zip
tests/reproducible_testing/Rscript/Figure3.pdf
build/vignette.rds
data/Input_Example.rda
data/QC_out.rda
data/Tree.rda
R/Phylogeny_tree.R R/validation_tools.R R/Cluster_selection.R R/QuantumClone.R R/descent.R R/plots.R R/data.R R/FlashQC.R R/Tree_generation.R R/EM.R R/QuantumCat.R man/One_D_plot.Rd man/is_included.Rd man/BIC_criterion.Rd man/add_leaf_list.Rd man/Create_prior_cutTree.Rd man/FlashQC.Rd man/Precision_Recall.Rd man/Tidy_output.Rd man/check_leaf.Rd man/Cluster_plot_from_cell.Rd man/longueur.Rd man/MajorityVote.Rd man/FullEM.Rd man/ProbDistMatrix.Rd man/grzero.Rd man/FLASH_main.Rd man/plot_cell_from_Return_out.Rd man/find_x_position.Rd man/m.step.Rd man/From_freq_to_cell.Rd man/e.step.Rd man/EM.algo.Rd man/One_step_clustering.Rd man/strcount.Rd man/manual_plot_trees.Rd man/eval.fik.m.Rd man/multiplot_trees.Rd man/evolution_plot.Rd man/phylo_tree_generation.Rd man/Input_Example.Rd man/check_split.Rd man/zscore.Rd man/hard.clustering.Rd man/Compute_NMI.Rd man/QuantumCat.Rd man/Probability.to.belong.to.clone.Rd man/QC_output.Rd man/Patient_schrodinger_cellularities.Rd man/CellularitiesFromFreq.Rd man/EM_clustering.Rd man/update_probs.Rd man/filter_on_fik.Rd man/NMI_cutree.Rd man/grbase.Rd man/plot_QC_out.Rd man/Compute_objective.Rd man/plot_with_margins_densities.Rd man/parallelEM.Rd man/Tree_generation.Rd man/list_prod.Rd man/create_priors.Rd man/Tree.Rd man/QuantumClone.Rd man/BIC_criterion_FLASH.Rd man/Cellular_preclustering.Rd vignettes/Use_case.Rmd vignettes/Release.Rmd inst/doc/Use_case.Rmd
inst/doc/Release.html
inst/doc/Use_case.html
inst/doc/Release.Rmd inst/doc/Use_case.R
QuantumClone documentation built on Nov. 17, 2017, 5:24 a.m.