API for ReporterScore
Generalized Reporter Score-Based Enrichment Analysis for Omics Data
| Global functions | |
|---|---|
| %>% | Man page |
| .onAttach | Source code |
| CPDlist | Man page |
| Compound_htable | Man page |
| GOlist | Man page |
| GRSA | Man page |
| GRSA_by_cm | Man page |
| KO_abundance | Man page |
| KO_enrich | Man page Source code |
| KO_enrich_internal | Source code |
| KO_fisher | Man page Source code |
| KO_gsa | Man page |
| KO_gsea | Man page |
| KO_gsva | Man page |
| KO_htable | Man page |
| KO_padog | Man page |
| KO_safe | Man page |
| KO_sea | Man page |
| KOlist | Man page |
| Module_htable | Man page |
| Pathway_htable | Man page |
| RSA | Man page |
| RSA_by_cm | Man page |
| ReporterScore | Man page |
| ReporterScore-package | Man page |
| as.enrich_res | Man page |
| brite2df | Source code |
| brite2df2 | Source code |
| brite_file2df | Source code |
| c_means | Man page |
| cm_test_k | Man page |
| combine_rs_res | Man page Source code |
| custom_modulelist | Man page |
| custom_modulelist_from_org | Man page |
| deprecated | Source code |
| download_org_pathway | Man page |
| extract_cluster | Man page |
| gene2ko | Man page |
| genedf | Man page |
| get_KOs | Man page |
| get_features | Man page |
| get_org_pathway | Man page |
| get_reporter_score | Man page |
| hsa_kegg_pathway | Man page |
| ko.test | Man page Source code |
| load_CARDinfo | Man page Source code |
| load_CPDlist | Man page Source code |
| load_Compound_htable | Man page Source code |
| load_GOinfo | Man page Source code |
| load_GOlist | Man page Source code |
| load_KO_desc | Man page Source code |
| load_KO_htable | Man page Source code |
| load_KOlist | Man page Source code |
| load_Module_htable | Man page Source code |
| load_Pathway_htable | Man page Source code |
| load_htable | Man page Source code |
| load_org_pathway | Man page Source code |
| load_something | Source code |
| metadata | Man page |
| mmu_kegg_pathway | Man page |
| modify_description | Man page |
| plot.cm_res | Man page |
| plot.enrich_res | Man page |
| plot_KEGG_map | Man page |
| plot_KOs_box | Man page |
| plot_KOs_distribution | Man page |
| plot_KOs_heatmap | Man page |
| plot_KOs_in_pathway | Man page |
| plot_KOs_network | Man page |
| plot_c_means | Man page |
| plot_enrich_res | Man page |
| plot_features_box | Man page |
| plot_features_distribution | Man page |
| plot_features_heatmap | Man page |
| plot_features_in_pathway | Man page |
| plot_features_network | Man page |
| plot_htable | Man page |
| plot_report | Man page Source code |
| plot_report_bar | Man page |
| plot_report_circle_packing | Man page |
| plot_significance | Man page |
| pre_compound_in_pathway | Source code |
| pre_gene_in_pathway | Source code |
| pre_reporter_res | Source code |
| print.reporter_score | Man page Source code |
| print.rs_by_cm | Man page Source code |
| pvalue2zs | Man page |
| reporter_score | Man page Source code |
| reporter_score_res | Man page |
| reporter_score_res2 | Man page |
| transform_modulelist | Man page |
| up_level_KO | Man page |
| update_CARDinfo | Man page Source code |
| update_GOinfo | Man page Source code |
| update_GOlist | Man page Source code |
| update_KEGG | Man page Source code |
| update_KO_file | Man page Source code |
| update_htable | Man page Source code |
| update_org_pathway | Man page Source code |
