Files in ReporterScore
Generalized Reporter Score-Based Enrichment Analysis for Omics Data
MD5
NEWS.md
NAMESPACE
DESCRIPTION
R/calculation.R
R/print.R
R/utils-pipe.R
R/check_files.R
R/data.R
R/enrichment.R
R/plot.R
R/ReporterScore-package.R
inst/CITATION
inst/doc/ReporterScore.R
inst/doc/ReporterScore.Rmd
inst/doc/ReporterScore.html
build/vignette.rds
vignettes/ReporterScore.Rmd
data/datalist
data/genedf.rda
data/Pathway_htable.rda
data/reporter_score_res.rda
data/KO_htable.rda
data/hsa_kegg_pathway.rda
data/mmu_kegg_pathway.rda
data/KOlist.rda
data/KO_abundance_test.rda
data/Module_htable.rda
data/Compound_htable.rda
data/CPDlist.rda
man/KO_gsva.Rd
man/KO_sea.Rd
man/plot_features_network.Rd
man/pvalue2zs.Rd
man/plot.cm_res.Rd
man/KO_htable.Rd
man/CPDlist.Rd
man/update_KEGG.Rd
man/plot_enrich_res.Rd
man/Pathway_htable.Rd
man/KO_gsea.Rd
man/ko.test.Rd
man/plot_report_circle_packing.Rd
man/plot_features_in_pathway.Rd
man/plot_report.Rd
man/load_CARDinfo.Rd
man/KOlist.Rd
man/ReporterScore-package.Rd
man/KO_safe.Rd
man/plot_htable.Rd
man/Module_htable.Rd
man/KO_fisher.Rd
man/update_CARDinfo.Rd
man/reporter_score.Rd
man/plot_significance.Rd
man/mmu_kegg_pathway.Rd
man/up_level_KO.Rd
man/KO_gsa.Rd
man/reporter_score_res.Rd
man/print.rs_by_cm.Rd
man/GOlist.Rd
man/export_report_table.Rd
man/plot_features_heatmap.Rd
man/plot_features_distribution.Rd
man/RSA_by_cm.Rd
man/genedf.Rd
man/load_htable.Rd
man/plot_features_box.Rd
man/custom_modulelist_from_org.Rd
man/pipe.Rd
man/print.reporter_score.Rd
man/get_reporter_score.Rd
man/gene2ko.Rd
man/get_features.Rd
man/hsa_kegg_pathway.Rd
man/update_GOlist.Rd
man/combine_rs_res.Rd
man/custom_modulelist.Rd
man/KO_abundance.Rd
man/Compound_htable.Rd
man/KO_enrich.Rd
man/plot_KEGG_map.Rd
man/modify_description.Rd
man/load_GOlist.Rd
man/c_means.Rd
man/KO_padog.Rd
