vis_pathway_cross_omics: Visualize cross-omics of one pathway among pan-cancers
In UCSCXenaShiny: Interactive Analysis of UCSC Xena Data

vis_pathway_cross_omics

R Documentation

Visualize cross-omics of one pathway among pan-cancers

Description

Visualize cross-omics of one pathway among pan-cancers

Usage

vis_pathway_cross_omics(
  pw = "HALLMARK_ADIPOGENESIS",
  tumor_projects = NULL,
  tumor_samples = NULL,
  pval_mrna = c(0.05, 0.01, 0.001),
  return_list = FALSE
)

Arguments

`pw`	pathway name
`tumor_projects`	Select specific TCGA projects. Default NULL, indicating all TCGA projects.
`tumor_samples`	Select specific tumor samples. Default NULL, indicating all tumor samples.
`pval_mrna`	The P value thresholds
`return_list`	TRUE returns a list including plot object and data. FALSE just returns plot.