whop.go.connect: Establish a connection to the AmiGO database servers

Description Usage Arguments Value Author(s) References

View source: R/x_go.R

Description

Establish a connection to the AmiGO database servers or an arbitrary one with the same database schema as the AmiGO DB.

Usage

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whop.go.connect(althost = NA, altport = NA, altuser = NA, altpass = NA,
					altdb = NA, altdbdrivername=NA, dbdrvpkgnam=NA)

Arguments

althost

Optional override for the hostname of the database server; default "mysql.ebi.ac.uk"

altport

Optional override for the port to connect to on the database server; default 4085

altuser

Optional override for the username to authenticate with; default "go_select"

altpass

Optional override for the password to authenticate with; default "amigo"

altdb

Optional override for the database name to connect to;default "go_latest"

altdbdrivername

Optional override for the DBMS driver to use;default "MySQL"

dbdrvpkgnam

Optional hint which R package provides the DBMS driver (e.g. " RMySQL" for the MySQL DBMS driver)

Value

Success status

Author(s)

Ulrich Wittelsbuerger

References

AmiGO database


WhopGenome documentation built on May 1, 2019, 10:12 p.m.