R/samples.R

In WhopGenome: High-Speed Processing of VCF, FASTA and Alignment Data

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###		Samples
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#
#	returns a string-vector of sample names used in the VCF file
#
vcf_getsamples <- function( vcffh )return( .Call("VCF_getSampleNames",vcffh,PACKAGE="WhopGenome") )


#
#	Selects from which samples data should be returned in the read_matrix functions
#
vcf_selectsamples <- function( vcffh, sampleslist )	return( .Call("VCF_selectSamples",vcffh,sampleslist,PACKAGE="WhopGenome") )

#
#
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vcf_getselectedsamples <- function( vcffh ) return( .Call("VCF_getSelectedSamples",vcffh,PACKAGE="WhopGenome") )