bg-class: Class '"bg"'

In chipPCR: Toolkit of Helper Functions to Pre-Process Amplification Data

Description

An S4 class containing the output bg.max function.

Value

An object containing result of the bg.max function.

Slots

.Data:

"matrix" which columns represent respectively cycle number, raw fluorescence data, first derivative and second derivative.

bg.start:

"numeric" value representing start of the background range.

bg.stop:

"numeric" value representing end of the background range.

bg.corr:

"numeric" a value which helps to tweak on the suggested background value of bg.max.

fluo:

"numeric" a value of fluorescence at the end of amplification.

amp.stop:

"numeric" value representing end of the amplification .

Methods

plot

signature(x = "bg"): plots background information. See plot.bg

show

signature(object = "bg"): prints only .Data slot of the object.

summary

signature(object = "bg"): prints information about object prettier than show and allows easy access to some slots. See summary.bg

Author(s)

Stefan Roediger, Michal Burdukiewicz

See Also

bg.max, plot.bg, summary.bg

Examples

res <- AmpSim(cyc = 1:40, Cq = 25)
tmp <- bg.max(res)
summary(tmp)
plot(tmp)

chipPCR documentation built on March 5, 2021, 9:06 a.m.