plot-refMFI: Plot 'refMFI' objects
In chipPCR: Toolkit of Helper Functions to Pre-Process Amplification Data

Description Usage Arguments Details Value Author(s) References See Also

Draw quick diagnostic plots of amplification reaction.

## S4 method for signature 'refMFI'
plot(x, CV = FALSE, type = "p", pch = 19, length = 0.05, 
                        col = "black")
## S4 method for signature 'refMFI,refMFI'
plot(x, y, CV = FALSE, type = "p", pch = 19, length = 0.05, 
                        col = "black")

`x`	is a `refMFI` object. refMFI means referenced Mean Fluorescence Intensity (Roediger et al. 2013)
`y`	optionally an additional `refMFI` object.
`CV`	If `CV` is true the coefficient of variation (RSD, CV) is plotted. If set to `FALSE` the deviation as Standard Deviation or Median Absolute Deviation is plotted.
`type`	is a graphical parameter setting the plot use lines, points or both (see `plot`).
`pch`	is a graphical parameter used to define the symbol used in the plot.
`length`	`length` is a graphical parameter used to define the length of the error bar used in the plot.
`col`	`col` is a graphical parameter used to define the length of the error bar used in the plot.

This function is a relative of the MFIerr function from the MBmca package (Roediger et al. 2013, The R Journal). The plot being a result of this function is built from three subplots. If y parameter is not absent, it is plotted in lighter color than x.

No return value, called for side effects.

Stefan Roediger, Michal Burdukiewicz

Roediger S, Boehm A, Schimke I. Surface Melting Curve Analysis with R. The R Journal 2013;5:37–53.

refMFI

chipPCR documentation built on March 5, 2021, 9:06 a.m.