Files in cvasi

Calibration, Validation, and Simulation of TKTD Models

NEWS.md README.md R/model-algae.R R/man-lemna.R R/model-deb_abj.R R/dose_response.R R/sequence.R R/show.R R/get.R R/calibrate.R R/get_param.R R/set_transfer.R R/get_times.R R/batch.R R/set_exposure.R R/solver.R R/utils-pipe.R R/model-magma.R R/set_init.R R/is.R R/class-CalibrationSet.R R/lik_profile.R R/epx.R R/set_bounds.R R/man-deb.R R/import_toxswa.R R/set_window.R R/data.R R/simulate.R R/pll.R R/model-debtox.R R/fit_tktd.R R/model-deb_daphnia.R R/man-macrophytes.R R/set_forcings.R R/set_param.R R/class-ParameterSet.R R/model-lemna_setac.R R/get_tag.R R/survival.R R/cache.R R/plot.R R/log.R R/tox_data.R R/model-lemna_schmitt.R R/has.R R/effect.R R/model-guts_red.R R/package.R R/plotting.r R/class-Transferable.R R/pull.R R/set_times.R R/fit_growth.R R/globals.R R/explore_space.R R/class-ExposureSeries.R R/numerics.R R/class-EffectScenario.R R/fx.R R/model-guts.R R/import_morse.R R/set.R inst/fit_log.Rmd inst/doc/cvasi-2-howto.R inst/doc/cvasi-1-manual.R inst/doc/cvasi-1-manual.Rmd inst/doc/cvasi-2-howto.Rmd tests/testthat.R tests/data/EFSA_propiconazole/import.R tests/data/morse/data-morse.R tests/testthat/test-clip.R tests/testthat/test-verify-guts.R tests/testthat/test-simulate_sequence.R tests/testthat/test-model-lemna_setac.R tests/testthat/test-fit_tktd.R tests/testthat/test-plot.R tests/testthat/test-fx.R tests/testthat/test-import_morse.R tests/testthat/test-model-deb_abj.R tests/testthat/test-model-magma.R tests/testthat/test-set_param.R tests/testthat/test-get_tag.R tests/testthat/test-model-guts_red.R tests/testthat/test-caliset.R tests/testthat/test-plotting.R tests/testthat/test-lik_profile.R tests/testthat/test-verify-guts_red.R tests/testthat/test-tox_data.R tests/testthat/test-log_lik.R tests/testthat/test-explore_space.R tests/testthat/test-get.R tests/testthat/test-import_toxswa.R tests/testthat/test-eval_cs.R tests/testthat/test-effect.R tests/testthat/test-set_exposure.R tests/testthat/test-model-lemna_schmitt.R tests/testthat/test-set_transfer.R tests/testthat/test-parameter_set.R tests/testthat/test-model-debtox.R tests/testthat/test-get_param.R tests/testthat/test-simulate_transfer.R tests/testthat/test-set_bounds.R tests/testthat/init-simulate_Daphnia.R tests/testthat/test-fit_growth.R tests/testthat/test-ringtest_dataA_IT.R tests/testthat/test-simulate.R tests/testthat/test-simulate_scenario.R tests/testthat/test-model-guts.R tests/testthat/test-has.R tests/testthat/test-batch.R tests/testthat/Rplots.pdf tests/testthat/test-calibrate.R tests/testthat/test-survival.R tests/testthat/test-simulate_batch2.R tests/testthat/test-is.R tests/testthat/test-solver.R tests/testthat/test-epx.R tests/testthat/test-show.R tests/testthat/test-sequence.R tests/testthat/test-cache.R tests/testthat/test-get_bounds.R tests/testthat/test-set.R tests/testthat/dummy.R tests/testthat/test-set_init.R tests/testthat/morse_guts-red.R tests/testthat/test-ringtest_dataA_SD.R tests/testthat/test-simulate_batch.R tests/testthat/test-get_times.R tests/testthat/test-model-algae.R tests/testthat/test-set_times.R tests/testthat/_snaps/verify-guts_red.md tests/testthat/_snaps/verify-guts.md vignettes/cvasi-1-manual.Rmd vignettes/cvasi-2-howto.Rmd man/Magma-class.Rd man/plot_scenario.Rd man/set_param.Rd man/batch.Rd man/get_tag.Rd man/GUTS_RED_IT.Rd man/epx.Rd man/is_deb.Rd man/metsulfuron.Rd man/GUTS-RED-models.Rd man/dmagna.Rd man/get_param.Rd man/set_exposure.Rd man/set_bounds.Rd man/log_scenarios.Rd man/fx.Rd man/solver.Rd man/plot_epx.Rd man/dose_response.Rd man/effect.Rd man/Lemna-models.Rd man/sequence.Rd man/set_tag.Rd man/DEB-models.Rd man/is_lemna.Rd man/set_endpoints.Rd man/Algae_Simple.Rd man/set_forcings.Rd man/is_scenario.Rd man/pull_metadata.Rd man/tox_data.Rd man/Algae-models.Rd man/calibrate.Rd man/parameter_set.Rd man/DEBtox.Rd man/set_times.Rd man/rsubcapitata.Rd man/Transferable.Rd man/log_envir.Rd man/CalibrationSet.Rd man/ringtest_c.Rd man/set_transfer.Rd man/focusd1.Rd man/plot_sd.Rd man/is_LemnaThreshold.Rd man/ci_from_hessian.Rd man/import_toxswa.Rd man/GUTS_RED_SD.Rd man/Lemna_Schmitt.Rd man/ExposureSeries.Rd man/import_morse.Rd man/no_exposure.Rd man/fit_tktd.Rd man/log_lik.Rd man/Lemna_SETAC.Rd man/schmitt2013.Rd man/DEB_abj.Rd man/Algae_Weber.Rd man/import_swash.Rd man/plot.param_space.Rd man/explore_space.Rd man/simulate_batch.Rd man/pipe.Rd man/diagnostics.Rd man/americamysis.Rd man/Macrophyte-models.Rd man/simulate.Rd man/is_guts.Rd man/GUTS_SD.Rd man/plot.Rd man/lik_profile.Rd man/minnow_sd.Rd man/minnow_it.Rd man/pll_debug.Rd man/td2cs.Rd man/Algae_TKTD.Rd man/Magma.Rd man/set_mode_of_action.Rd man/get_times.Rd man/set_noexposure.Rd man/Scenarios.Rd man/plot_ppc_combi.Rd man/cache_controls.Rd man/log_msg.Rd man/log_enable.Rd man/survival.Rd man/ringtest_it.Rd man/GUTS_IT.Rd man/set_init.Rd man/num_info.Rd man/plot_ppc.Rd man/ringtest_sd.Rd man/epx_mtw.Rd man/get_model.Rd man/set_window.Rd man/sequence.extract.Rd man/fit_growth.Rd