BiopsyTrees: Example Ig lineage trees with biopsy reconstructions.
In dowser: B Cell Receptor Phylogenetics Toolkit

BiopsyTrees

R Documentation

Example Ig lineage trees with biopsy reconstructions.

Description

Same as ExampleClones but with biopsies predicted at internal nodes

Usage

BiopsyTrees

Format

A tibble of airrClone and phylo objects output by getTrees.

clone_id: Clonal cluster
data: List of airrClone objects
seqs: Number of sequences
trees: List of phylo objects

See Also

BiopsyTrees

dowser documentation built on Sept. 16, 2026, 9:07 a.m.

dowser index

Package overview README.md Building trees with paired heavy and light chain data Build Lineage Trees Build Time Trees Using TyCHE and BEAST Discrete Trait Analysis Input and Output Measurable evolution Plotting Lineage Trees Quickstart Reconstruct Clonal Germlines Reconstruct Intermediate Sequences Removing problematic sequences Build B cell lineage trees Building trees with paired heavy and light chain data Build Time Trees Using TyCHE and BEAST Detect ongoing B cell evolution Discrete trait analysis Dowser: Simple lineage tree construction Input/output Plot B cell lineage trees Reconstruct clonal germline sequences Reconstruct intermediate sequences Removing problematic sequences Using data from non-B cells

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