create_root_freqs: Takes an airr clone object and returns BEAST2 rootfreqs xml...
In dowser: B Cell Receptor Phylogenetics Toolkit

View source: R/TimeTreesFunctions.R

create_root_freqs

R Documentation

Takes an airr clone object and returns BEAST2 rootfreqs xml of the germline

Description

Takes an airr clone object and returns BEAST2 rootfreqs xml of the germline

Usage

create_root_freqs(clone, id)

Arguments

`clone`	an `airrClone` object
`id`	unique identifer for this analysis

Value

String of XML setting the root frequencies to the germline sequence

dowser documentation built on Nov. 5, 2025, 6:36 p.m.

dowser index

Package overview README.md Building trees with paired heavy and light chain data Build Lineage Trees Build Time Trees Using TyCHE and BEAST Discrete Trait Analysis Measurable evolution Plotting Lineage Trees Quickstart Reconstruct Clonal Germlines Reconstruct Intermediate Sequences Build B cell lineage trees Building trees with paired heavy and light chain data Build Time Trees Using TyCHE and BEAST Detect ongoing B cell evolution Discrete trait analysis Dowser: Simple lineage tree construction Plot B cell lineage trees Reconstruct clonal germline sequences Reconstruct intermediate sequences Using data from non-B cells

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