condenseTrees: Condense a set of equally parsimonious node labels into a...
In dowser: B Cell Receptor Phylogenetics Toolkit

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condenseTrees

R Documentation

Condense a set of equally parsimonious node labels into a single tree

Description

condenseTrees Condenses a set of equally parsimonious node labels into a single tree

Usage

condenseTrees(trees, states, palette = NULL)

Arguments

`trees`	List of the same tree with equally parsimonious labels
`states`	States in model
`palette`	Named vector with a color per state

Value

a phylo object representing all represented internal node states

dowser documentation built on Sept. 16, 2026, 9:07 a.m.

dowser index

Package overview README.md Building trees with paired heavy and light chain data Build Lineage Trees Build Time Trees Using TyCHE and BEAST Discrete Trait Analysis Input and Output Measurable evolution Plotting Lineage Trees Quickstart Reconstruct Clonal Germlines Reconstruct Intermediate Sequences Removing problematic sequences Build B cell lineage trees Building trees with paired heavy and light chain data Build Time Trees Using TyCHE and BEAST Detect ongoing B cell evolution Discrete trait analysis Dowser: Simple lineage tree construction Input/output Plot B cell lineage trees Reconstruct clonal germline sequences Reconstruct intermediate sequences Removing problematic sequences Using data from non-B cells

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