ExampleAirrTyCHE: Example AIRR database for TyCHE

In dowser: B Cell Receptor Phylogenetics Toolkit

Example AIRR database for TyCHE

Description

A small example database from simble.

Usage

ExampleAirrTyCHE

Format

A data.frame with the following AIRR style columns:

• sequence_id: Sequence identifier

• sequence_alignment: IMGT-gapped observed sequence.

• germline_alignment: IMGT-gapped germline sequence.

• v_call: V region allele assignments.

• d_call: D region allele assignments.

• j_call: J region allele assignments.

• junction: Junction region sequence.

• junction_length: Length of the junction region in nucleotides.

• np1_length: Combined length of the N and P regions proximal to the V region.

• np2_length: Combined length of the N and P regions proximal to the J region.

• sample_time: Time point of the sample.

• location: Location of tissue from which the sample was taken.

• clone_id: Clonal group identifier.

References

1. Pre-submission.

dowser documentation built on Nov. 5, 2025, 6:36 p.m.