create_max_height_prior: Takes an airr clone object and returns BEAST2 XML to set a...
In dowser: B Cell Receptor Phylogenetics Toolkit

View source: R/TimeTreesFunctions.R

create_max_height_prior

R Documentation

Takes an airr clone object and returns BEAST2 XML to set a maximum height prior

Description

Takes an airr clone object and returns BEAST2 XML to set a maximum height prior

Usage

create_max_height_prior(clone, id, max_start_date)

Arguments

`clone`	an `airrClone` object
`id`	unique identifer for this analysis
`max_start_date`	max start date to use for prior, in forward time

Value

String of XML setting the MRCA prior of the observed sequences

dowser documentation built on Nov. 5, 2025, 6:36 p.m.

dowser index

Package overview README.md Building trees with paired heavy and light chain data Build Lineage Trees Build Time Trees Using TyCHE and BEAST Discrete Trait Analysis Measurable evolution Plotting Lineage Trees Quickstart Reconstruct Clonal Germlines Reconstruct Intermediate Sequences Build B cell lineage trees Building trees with paired heavy and light chain data Build Time Trees Using TyCHE and BEAST Detect ongoing B cell evolution Discrete trait analysis Dowser: Simple lineage tree construction Plot B cell lineage trees Reconstruct clonal germline sequences Reconstruct intermediate sequences Using data from non-B cells

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