filterPartialSeqs: 'filterPartialSeqs'
In dowser: B Cell Receptor Phylogenetics Toolkit
filterPartialSeqs R Documentation
filterPartialSeqs
Description
filterPartialSeqs
Usage
filterPartialSeqs(
data,
seq = "sequence_alignment",
cutoff = 250,
pattern = "[ATCG]",
verbose = TRUE
)
Arguments
data
Data table of sequences (preferably in AIRR format)
seq
name of sequence column for filtering
cutoff
number of matches to the pattern option required
pattern
regex for matching (defaults to A, T, C, or G)
verbose
print out number of seqs removed
data(ExampleAirr)
filtered = filterPartialSeqs(ExampleAirr)
dowser documentation built on Aug. 20, 2026, 5:06 p.m.
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| filterPartialSeqs | R Documentation |
filterPartialSeqs
Description
filterPartialSeqs
Usage
filterPartialSeqs(
data,
seq = "sequence_alignment",
cutoff = 250,
pattern = "[ATCG]",
verbose = TRUE
)
Arguments
data |
Data table of sequences (preferably in AIRR format) |
seq |
name of sequence column for filtering |
cutoff |
number of matches to the |
pattern |
regex for matching (defaults to A, T, C, or G) |
verbose |
print out number of seqs removed data(ExampleAirr) filtered = filterPartialSeqs(ExampleAirr) |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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