calcRF: Finds the Robinson-Fould's cluster distance between...
In dowser: B Cell Receptor Phylogenetics Toolkit
calcRF R Documentation
Finds the Robinson-Fould's cluster distance between phylogenies.
Description
calcRF Calculates the RF distance between two phylogenetic trees with
the same tips and tip labels.
Usage
calcRF(tree_1, tree_2, nproc = 1, normalize = FALSE, include_root = TRUE)
Arguments
tree_1
A phylo object
tree_2
A phylo object
nproc
Number of cores to use for calculations.
normalize
Normalize RF by maximum RF distance
include_root
If TRUE include root split in denominator when
normalize=TRUE. If FALSE root split won't be counted
as a possible split if trees are rooted at same tip.
Value
The RF cluster value for the two input trees.
dowser documentation built on Aug. 20, 2026, 5:06 p.m.
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| calcRF | R Documentation |
Finds the Robinson-Fould's cluster distance between phylogenies.
Description
calcRF Calculates the RF distance between two phylogenetic trees with
the same tips and tip labels.
Usage
calcRF(tree_1, tree_2, nproc = 1, normalize = FALSE, include_root = TRUE)
Arguments
tree_1 |
A |
tree_2 |
A |
nproc |
Number of cores to use for calculations. |
normalize |
Normalize RF by maximum RF distance |
include_root |
If TRUE include root split in denominator when normalize=TRUE. If FALSE root split won't be counted as a possible split if trees are rooted at same tip. |
Value
The RF cluster value for the two input trees.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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