getNodeSeq: Return IMGT gapped sequence of specified tree node

In dowser: B Cell Receptor Phylogenetics Toolkit

Return IMGT gapped sequence of specified tree node

Description

getNodeSeq Sequence retrieval function.

Usage

getNodeSeq(data, node, tree = NULL, clone = NULL, check = TRUE, gaps = TRUE)

Arguments

data	a tibble of airrClone objects, the output of getTrees
node	numeric node in tree (see details)
tree	a phylo tree object containing node
clone	if tree not specified, supply clone ID in data
check	check node divergences beforehand (see checkNodeDivergences)
gaps	add IMGT gaps to output sequences?

Details

Use plotTrees(trees)[[1]] + geom_label(aes(label=node))+geom_tippoint() to show node labels, and getNodeSeq to return internal node sequences

Value

A vector with sequence for each locus at a specified node in tree.

See Also

getTrees

dowser documentation built on Aug. 20, 2026, 5:06 p.m.