getNodeSeq: Return IMGT gapped sequence of specified tree node
In dowser: B Cell Receptor Phylogenetics Toolkit
View source: R/TreeFunctions.R
getNodeSeq R Documentation
Return IMGT gapped sequence of specified tree node
Description
getNodeSeq Sequence retrieval function.
Usage
getNodeSeq(data, node, tree = NULL, clone = NULL, gaps = TRUE)
Arguments
data
a tibble of airrClone objects, the output of
getTrees
node
numeric node in tree (see details)
tree
a phylo tree object containing node
clone
if tree not specified, supply clone ID in data
gaps
add IMGT gaps to output sequences?
Details
Use plotTrees(trees)[[1]] + geom_label(aes(label=node))+geom_tippoint() to show
node labels, and getNodeSeq to return internal node sequences
Value
A vector with sequence for each locus at a specified node
in tree.
See Also
getTrees
dowser documentation built on May 29, 2024, 3:06 a.m.
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View source: R/TreeFunctions.R
| getNodeSeq | R Documentation |
Return IMGT gapped sequence of specified tree node
Description
getNodeSeq Sequence retrieval function.
Usage
getNodeSeq(data, node, tree = NULL, clone = NULL, gaps = TRUE)
Arguments
data |
a tibble of |
node |
numeric node in tree (see details) |
tree |
a |
clone |
if |
gaps |
add IMGT gaps to output sequences? |
Details
Use plotTrees(trees)[[1]] + geom_label(aes(label=node))+geom_tippoint() to show node labels, and getNodeSeq to return internal node sequences
Value
A vector with sequence for each locus at a specified node
in tree.
See Also
getTrees
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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