downsampleClone: 'downsampleClone' Down-sample clone to maximum tip/switch...
In dowser: B Cell Receptor Phylogenetics Toolkit

View source: R/TreeFunctions.R

downsampleClone

R Documentation

`downsampleClone` Down-sample clone to maximum tip/switch ratio

Description

downsampleClone Down-sample clone to maximum tip/switch ratio

Usage

downsampleClone(clone, trait, tip_switch = 20, tree = NULL)

Arguments

`clone`	an airrClone object
`trait`	trait considered for rarefaction getTrees
`tip_switch`	maximum tip/switch ratio
`tree`	a `phylo` tree object correspond to `clone`

Value

A vector with sequence for each locus at a specified node in tree.

dowser documentation built on Nov. 5, 2025, 6:36 p.m.

dowser index

Package overview README.md Building trees with paired heavy and light chain data Build Lineage Trees Build Time Trees Using TyCHE and BEAST Discrete Trait Analysis Measurable evolution Plotting Lineage Trees Quickstart Reconstruct Clonal Germlines Reconstruct Intermediate Sequences Build B cell lineage trees Building trees with paired heavy and light chain data Build Time Trees Using TyCHE and BEAST Detect ongoing B cell evolution Discrete trait analysis Dowser: Simple lineage tree construction Plot B cell lineage trees Reconstruct clonal germline sequences Reconstruct intermediate sequences Using data from non-B cells

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