getDivergence: Get divergence from root of tree for each tip
In dowser: B Cell Receptor Phylogenetics Toolkit
getDivergence R Documentation
Get divergence from root of tree for each tip
Description
getDivergence get sum of branch lengths leading from the
root of the tree. If the germline sequence is included in the tree,
this will equal the germline divergence. If germline removed,
this will equal the MRCA divergence
Usage
getDivergence(phy, minlength = 0.001)
Arguments
phy
Tree object
minlength
Branch lengths to collapse in trees
Value
A named vector of each tip's divergence from the tree's root.
dowser documentation built on May 29, 2024, 3:06 a.m.
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| getDivergence | R Documentation |
Get divergence from root of tree for each tip
Description
getDivergence get sum of branch lengths leading from the
root of the tree. If the germline sequence is included in the tree,
this will equal the germline divergence. If germline removed,
this will equal the MRCA divergence
Usage
getDivergence(phy, minlength = 0.001)
Arguments
phy |
Tree object |
minlength |
Branch lengths to collapse in trees |
Value
A named vector of each tip's divergence from the tree's root.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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