getDivergence: Get divergence from root of tree for each tip
| getDivergence | R Documentation |
Get divergence from root of tree for each tip
Description
getDivergence get sum of branch lengths leading from the
root of the tree. If the germline sequence is included in the tree,
this will equal the germline divergence. If germline removed,
this will equal the MRCA divergence
Usage
getDivergence(phy, minlength = 0.001)
Arguments
phy |
Tree object |
minlength |
Branch lengths to collapse in trees |
Value
A named vector of each tip's divergence from the tree's root.
