dowser-package: dowser: B Cell Receptor Phylogenetics Toolkit
In dowser: B Cell Receptor Phylogenetics Toolkit
dowser-package R Documentation
dowser: B Cell Receptor Phylogenetics Toolkit
Description
Provides a set of functions for inferring, visualizing, and analyzing B cell phylogenetic trees. Provides methods to 1) reconstruct unmutated ancestral sequences, 2) build B cell phylogenetic trees using multiple methods, 3) visualize trees with metadata at the tips, 4) reconstruct intermediate sequences, 5) detect biased ancestor-descendant relationships among metadata types Workflow examples available at documentation site (see URL). Citations: Hoehn et al (2022) \Sexpr[results=rd]{tools:::Rd_expr_doi("10.1371/journal.pcbi.1009885")}, Hoehn et al (2021) \Sexpr[results=rd]{tools:::Rd_expr_doi("10.1101/2021.01.06.425648")}.
Author(s)
Maintainer: Kenneth Hoehn kenneth.b.hoehn@dartmouth.edu
Authors:
Steven Kleinstein steven.kleinstein@yale.edu [copyright holder]
Other contributors:
Cole Jensen cole.jensen@yale.edu [contributor]
Susanna Marquez susanna.marquez@yale.edu [contributor]
Jason Vander Heiden jason.vanderheiden@gmail.com [contributor]
See Also
Useful links:
dowser documentation built on May 29, 2024, 3:06 a.m.
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| dowser-package | R Documentation |
dowser: B Cell Receptor Phylogenetics Toolkit
Description
Provides a set of functions for inferring, visualizing, and analyzing B cell phylogenetic trees. Provides methods to 1) reconstruct unmutated ancestral sequences, 2) build B cell phylogenetic trees using multiple methods, 3) visualize trees with metadata at the tips, 4) reconstruct intermediate sequences, 5) detect biased ancestor-descendant relationships among metadata types Workflow examples available at documentation site (see URL). Citations: Hoehn et al (2022) \Sexpr[results=rd]{tools:::Rd_expr_doi("10.1371/journal.pcbi.1009885")}, Hoehn et al (2021) \Sexpr[results=rd]{tools:::Rd_expr_doi("10.1101/2021.01.06.425648")}.
Author(s)
Maintainer: Kenneth Hoehn kenneth.b.hoehn@dartmouth.edu
Authors:
Steven Kleinstein steven.kleinstein@yale.edu [copyright holder]
Other contributors:
Cole Jensen cole.jensen@yale.edu [contributor]
Susanna Marquez susanna.marquez@yale.edu [contributor]
Jason Vander Heiden jason.vanderheiden@gmail.com [contributor]
See Also
Useful links:
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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