colorTrees: Get a color palette for a predefined set of trait values
In dowser: B Cell Receptor Phylogenetics Toolkit

View source: R/Plotting.R

colorTrees

R Documentation

Get a color palette for a predefined set of trait values

Description

colorTree Gets a color palette for a predefined set of trait values

Usage

colorTrees(trees, palette, ambig = "blend")

Arguments

`trees`	list of phylo objects with assigned internal node states
`palette`	named vector of colors (see getPalette)
`ambig`	how should ambiguous states be colored (blend or grey)

Details

Trees must have node states represented in a "states" vector. By default, ambiguous states (separated by ",") have their colors blended. If

Value

A list of colored trees

See Also

getPalette, getTrees, plotTrees

dowser documentation built on May 29, 2024, 3:06 a.m.

dowser index

Package overview README.md Building trees with paired heavy and light chain data Build Lineage Trees Discrete Trait Analysis Measurable evolution Plotting Lineage Trees Quickstart Reconstruct Clonal Germlines Reconstruct Intermediate Sequences Build B cell lineage trees Building trees with paired heavy and light chain data Detect ongoing B cell evolution Discrete trait analysis Dowser: Simple lineage tree construction Plot B cell lineage trees Reconstruct clonal germline sequences Reconstruct intermediate sequences

rdrr.io home R language documentation Run R code online

CRAN packages Bioconductor packages R-Forge packages GitHub packages

Note that we can't provide technical support on individual packages. You should contact the package authors for that.

Tweet to @rdrrHQ

GitHub issue tracker

ian@mutexlabs.com