plot.enve.GrowthCurve: Enveomics: Plot of Growth Curve

In enveomics.R: Various Utilities for Microbial Genomics and Metagenomics

Enveomics: Plot of Growth Curve

Description

Plots an enve.GrowthCurve object.

Usage

## S3 method for class 'enve.GrowthCurve'
plot(
  x,
  col,
  pt.alpha = 0.9,
  ln.alpha = 1,
  ln.lwd = 1,
  ln.lty = 1,
  band.alpha = 0.4,
  band.density = NULL,
  band.angle = 45,
  xp.alpha = 0.5,
  xp.lwd = 1,
  xp.lty = 1,
  pch = 19,
  new = TRUE,
  legend = new,
  add.params = FALSE,
  ...
)

Arguments

x	An enve.GrowthCurve object to plot.
col	Base colors to use for the different samples. Can be recycled. By default, grey for one sample or rainbow colors for more than one.
pt.alpha	Color alpha for the observed data points, using col as a base.
ln.alpha	Color alpha for the fitted growth curve, using col as a base.
ln.lwd	Line width for the fitted curve.
ln.lty	Line type for the fitted curve.
band.alpha	Color alpha for the confidence interval band of the fitted growth curve, using col as a base.
band.density	Density of the filling pattern in the interval band. If NULL, a solid color is used.
band.angle	Angle of the density filling pattern in the interval band. Ignored if band.density is NULL.
xp.alpha	Color alpha for the line connecting individual experiments, using col as a base.
xp.lwd	Width of line for the experiments.
xp.lty	Type of line for the experiments.
pch	Point character for observed data points.
new	Should a new plot be generated? If FALSE, the existing canvas is used.
legend	Should the plot include a legend? If FALSE, no legend is added. If TRUE, a legend is added in the bottom-right corner. Otherwise, a legend is added in the position specified as xy.coords.
add.params	Should the legend include the parameters of the fitted model?
...	Any other graphic parameters.

Value

No return value.

Author(s)

Luis M. Rodriguez-R [aut, cre]

enveomics.R documentation built on April 13, 2022, 5:10 p.m.