gifmr: plot scatter plot for rt-mz profile and output gif file for...

In enviGCMS: GC/LC-MS Data Analysis for Environmental Science

plot scatter plot for rt-mz profile and output gif file for multiple groups

Description

plot scatter plot for rt-mz profile and output gif file for multiple groups

Usage

gifmr(
  list,
  ms = c(100, 500),
  rsdcf = 30,
  inscf = 5,
  imputation = "i",
  name = "test",
  ...
)

Arguments

list	list with data as peaks list, mz, rt and group information
ms	the mass range to plot the data
rsdcf	the rsd cutoff of all peaks in all group
inscf	Log intensity cutoff for peaks across samples. If any peaks show a intensity higher than the cutoff in any samples, this peaks would not be filtered. default 5
imputation	parameters for 'getimputation' function method
name	file name for gif file, default test
...	parameters for 'plot' function

Value

gif file

Examples

## Not run: 
data(list)
gifmr(list)

## End(Not run)

enviGCMS documentation built on Feb. 16, 2023, 8:08 p.m.