plote: plot EIC and boxplot for all peaks and return diffreport

In enviGCMS: GC/LC-MS Data Analysis for Environmental Science

plot EIC and boxplot for all peaks and return diffreport

Description

plot EIC and boxplot for all peaks and return diffreport

Usage

plote(xset, name = "test", test = "t", nonpara = "n", ...)

Arguments

xset	xcmsset object
name	filebase of the sub dir
test	't' means two-sample welch t-test, 't.equalvar' means two-sample welch t-test with equal variance, 'wilcoxon' means rank sum wilcoxon test, 'f' means F-test, 'pairt' means paired t test, 'blockf' means Two-way analysis of variance, default 't'
nonpara	'y' means using nonparametric ranked data, 'n' means original data
...	other parameters for 'diffreport'

Value

diffreport and pdf figure for EIC and boxplot

Examples

## Not run: 
library(faahKO)
cdfpath <- system.file('cdf', package = 'faahKO')
xset <- getdata(cdfpath, pmethod = ' ')
plote(xset)

## End(Not run)

enviGCMS documentation built on Feb. 16, 2023, 8:08 p.m.