plotmr: plot the scatter plot for peaks list with threshold

In enviGCMS: GC/LC-MS Data Analysis for Environmental Science

plot the scatter plot for peaks list with threshold

Description

plot the scatter plot for peaks list with threshold

Usage

plotmr(
  list,
  rt = NULL,
  ms = NULL,
  inscf = 5,
  rsdcf = 30,
  imputation = "l",
  ...
)

Arguments

list	list with data as peaks list, mz, rt and group information
rt	vector range of the retention time
ms	vector vector range of the m/z
inscf	Log intensity cutoff for peaks across samples. If any peaks show a intensity higher than the cutoff in any samples, this peaks would not be filtered. default 5
rsdcf	the rsd cutoff of all peaks in all group, default 30
imputation	parameters for 'getimputation' function method
...	parameters for 'plot' function

Value

data fit the cutoff

Examples

data(list)
plotmr(list)

enviGCMS documentation built on Feb. 16, 2023, 8:08 p.m.