plotmrc: plot the diff scatter plot for peaks list with threshold...

In enviGCMS: GC/LC-MS Data Analysis for Environmental Science

plot the diff scatter plot for peaks list with threshold between two groups

Description

plot the diff scatter plot for peaks list with threshold between two groups

Usage

plotmrc(list, ms = c(100, 800), inscf = 5, rsdcf = 30, imputation = "l", ...)

Arguments

list	list with data as peaks list, mz, rt and group information
ms	the mass range to plot the data
inscf	Log intensity cutoff for peaks across samples. If any peaks show a intensity higher than the cutoff in any samples, this peaks would not be filtered. default 5
rsdcf	the rsd cutoff of all peaks in all group
imputation	parameters for 'getimputation' function method
...	parameters for 'plot' function

Examples

data(list)
plotmrc(list)

enviGCMS documentation built on Feb. 16, 2023, 8:08 p.m.