svabatch: Plot the influences of DoE and Batch effects on each peaks

In enviGCMS: GC/LC-MS Data Analysis for Environmental Science

Plot the influences of DoE and Batch effects on each peaks

Description

Plot the influences of DoE and Batch effects on each peaks

Usage

svabatch(df, dfsv, dfanova)

Arguments

df	data output from 'svacor' function
dfsv	data output from 'svaplot' function for corrected data
dfanova	data output from 'svaplot' function for raw data

Value

influences plot

See Also

svacor, svaplot, svapca

Examples

## Not run: 
library(faahKO)
cdfpath <- system.file("cdf", package = "faahKO")
cdffiles <- list.files(cdfpath, recursive = TRUE, full.names = TRUE)
xset <- xcmsSet(cdffiles)
xset <- group(xset)
xset2 <- retcor(xset, family = "symmetric", plottype = "mdevden")
xset2 <- group(xset2, bw = 10)
xset3 <- fillPeaks(xset2)
df <- svacor(xset3)
dfsv <- svaplot(xset3)
dfanova <- svaplot(xset3, pqvalues = "anova")
svabatch(df,dfsv,dfanova)

## End(Not run)

enviGCMS documentation built on Feb. 16, 2023, 8:08 p.m.