svabatch: Plot the influnces of DoE and Batch effects on each peaks

Description Usage Arguments Value See Also Examples

View source: R/deprecated.R

Description

Plot the influnces of DoE and Batch effects on each peaks

Usage

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svabatch(df, dfsv, dfanova)

Arguments

df

data output from 'svacor' function

dfsv

data output from 'svaplot' function for corrected data

dfanova

data output from 'svaplot' function for raw data

Value

influnces plot

See Also

svacor, svaplot, svapca

Examples

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## Not run: 
library(faahKO)
cdfpath <- system.file("cdf", package = "faahKO")
cdffiles <- list.files(cdfpath, recursive = TRUE, full.names = TRUE)
xset <- xcmsSet(cdffiles)
xset <- group(xset)
xset2 <- retcor(xset, family = "symmetric", plottype = "mdevden")
xset2 <- group(xset2, bw = 10)
xset3 <- fillPeaks(xset2)
df <- svacor(xset3)
dfsv <- svaplot(xset3)
dfanova <- svaplot(xset3, pqvalues = "anova")
svabatch(df,dfsv,dfanova)

## End(Not run)

enviGCMS documentation built on July 8, 2020, 5:52 p.m.