svadata: Filter the data with p value and q value
In enviGCMS: GC/LC-MS Data Analysis for Environmental Science

svadata

R Documentation

Filter the data with p value and q value

Description

Filter the data with p value and q value

Usage

svadata(list, pqvalues = "sv", pt = 0.05, qt = 0.05)

Arguments

`list`	results from svacor function
`pqvalues`	method for ANOVA or SVA
`pt`	threshold for p value, default is 0.05
`qt`	threshold for q value, default is 0.05

Value

data, corrected data, mz and retention for filerted data

Examples

## Not run: 
library(faahKO)
cdfpath <- system.file("cdf", package = "faahKO")
cdffiles <- list.files(cdfpath, recursive = TRUE, full.names = TRUE)
xset <- xcmsSet(cdffiles)
xset <- group(xset)
xset2 <- retcor(xset, family = "symmetric", plottype = "mdevden")
xset2 <- group(xset2, bw = 10)
xset3 <- fillPeaks(xset2)
df <- svacor(xset3)
svadata(df)

## End(Not run)

enviGCMS documentation built on Feb. 16, 2023, 8:08 p.m.