API for mizer
Dynamic Multi-Species Size Spectrum Modelling
| Global functions | |
|---|---|
| BevertonHoltRDD | Man page Source code |
| MizerParams | Man page |
| MizerParams-class | Man page |
| MizerSim | Man page Source code |
| MizerSim-class | Man page |
| N | Man page Source code |
| NOther | Man page Source code |
| NResource | Man page Source code |
| NS_interaction | Man page |
| NS_params | Man page |
| NS_sim | Man page |
| NS_species_params | Man page |
| NS_species_params_gears | Man page |
| RickerRDD | Man page Source code |
| SheperdRDD | Man page Source code |
| `catchability<-` | Source code |
| `ext_encounter<-` | Source code |
| `ext_mort<-` | Source code |
| `gear_params<-` | Source code |
| `given_species_params<-` | Source code |
| `initialN<-` | Source code |
| `initialNOther<-` | Source code |
| `initialNResource<-` | Source code |
| `initial_effort<-` | Source code |
| `intake_max<-` | Source code |
| `interaction_matrix<-` | Source code |
| `maturity<-` | Source code |
| `metab<-` | Source code |
| `other_params<-` | Source code |
| `pred_kernel<-` | Source code |
| `repro_prop<-` | Source code |
| `resource_capacity<-` | Source code |
| `resource_dynamics<-` | Source code |
| `resource_level<-` | Source code |
| `resource_params<-` | Source code |
| `resource_rate<-` | Source code |
| `search_vol<-` | Source code |
| `selectivity<-` | Source code |
| `species_params<-` | Source code |
| addSpecies | Man page Source code |
| age_mat | Man page Source code |
| age_mat_vB | Man page Source code |
| animateSpectra | Man page Source code |
| balance_resource_logistic | Man page Source code |
| balance_resource_semichemostat | Man page Source code |
| box_pred_kernel | Man page Source code |
| calc_selectivity | Man page Source code |
| calculated_species_params | Man page |
| calibrateBiomass | Man page Source code |
| calibrateNumber | Man page Source code |
| calibrateYield | Man page Source code |
| catchability | Man page Source code |
| catchability<- | Man page |
| compareParams | Man page Source code |
| compareSpeciesParams | Source code |
| completeSpeciesParams | Man page |
| constantEggRDI | Man page Source code |
| constantRDD | Man page Source code |
| constant_other | Man page Source code |
| customFunction | Man page Source code |
| default_pred_kernel_params | Man page Source code |
| defaults_edition | Man page Source code |
| different | Man page Source code |
| distanceMaxRelRDI | Man page Source code |
| distanceSSLogN | Man page Source code |
| double_sigmoid_length | Man page Source code |
| dw | Man page Source code |
| dw_full | Man page Source code |
| emptyParams | Man page Source code |
| ext_encounter | Man page Source code |
| ext_encounter<- | Man page |
| ext_mort | Man page Source code |
| ext_mort<- | Man page |
| finalN | Man page Source code |
| finalNOther | Man page Source code |
| finalNResource | Man page Source code |
| gear_params | Man page Source code |
| gear_params<- | Man page |
| getBiomass | Man page Source code |
| getCatchability | Man page Source code |
| getColours | Man page Source code |
| getCommunitySlope | Man page Source code |
| getComponent | Man page Source code |
| getCriticalFeedingLevel | Man page Source code |
| getDiet | Man page Source code |
| getEGrowth | Man page Source code |
| getERepro | Man page Source code |
| getEReproAndGrowth | Man page Source code |
| getESpawning | Man page |
| getEffort | Man page Source code |
| getEncounter | Man page Source code |
| getExtEncounter | Man page Source code |
| getExtMort | Man page Source code |
| getFMort | Man page Source code |
| getFMortGear | Man page Source code |
| getFeedingLevel | Man page Source code |
| getGrowthCurves | Man page Source code |
| getInitialEffort | Man page Source code |
| getInteraction | Man page Source code |
| getLinetypes | Man page Source code |
| getM2 | Man page |
| getM2Background | Man page |
| getMaturityProportion | Man page Source code |
| getMaxIntakeRate | Man page Source code |
| getMeanMaxWeight | Man page Source code |
| getMeanWeight | Man page Source code |
| getMetabolicRate | Man page Source code |
| getMetadata | Man page Source code |
| getMort | Man page Source code |
| getN | Man page Source code |
| getParams | Man page Source code |
| getPhiPrey | Man page Source code |
| getPredKernel | Man page Source code |
| getPredMort | Man page Source code |
| getPredRate | Man page Source code |
| getProportionOfLargeFish | Man page Source code |
| getRDD | Man page Source code |
| getRDI | Man page Source code |
| getRateFunction | Man page Source code |
| getRates | Man page Source code |
| getReproductionLevel | Man page Source code |
| getReproductionProportion | Man page Source code |
| getRequiredRDD | Source code |
| getResourceCapacity | Man page Source code |
| getResourceDynamics | Man page Source code |
| getResourceLevel | Man page Source code |
| getResourceMort | Man page Source code |
| getResourceRate | Man page Source code |
| getSSB | Man page Source code |
| getSearchVolume | Man page Source code |
| getSelectivity | Man page Source code |
| getTimes | Man page Source code |
| getYield | Man page Source code |
| getYieldGear | Man page Source code |
| getZ | Man page |
| get_f0_default | Man page |
| get_gamma_default | Man page |
| get_h_default | Man page |
| get_initial_n | Man page Source code |
| get_ks_default | Man page |
| get_phi | Man page Source code |
| get_power_law_mort | Source code |
| get_required_reproduction | Man page Source code |
| get_size_range_array | Man page Source code |
| get_time_elements | Man page Source code |
| get_w_min_idx | Source code |
| given_species_params | Man page Source code |
| given_species_params<- | Man page |
| idxFinalT | Man page Source code |
| indicator_functions | Man page |
| initialN | Man page Source code |
| initialN<- | Man page |
| initialNOther | Man page Source code |
| initialNOther<- | Man page |
| initialNResource | Man page Source code |
| initialNResource<- | Man page |
| initial_effort | Man page Source code |
| initial_effort<- | Man page |
| inner_project_loop | Source code |
| intake_max | Man page Source code |
| intake_max<- | Man page |
| inter | Man page |
| interaction_matrix | Man page Source code |
| interaction_matrix<- | Man page |
| is_custom | Source code |
| knife_edge | Man page Source code |
| l2w | Man page Source code |
| log_breaks | Man page Source code |
| lognormal_pred_kernel | Man page Source code |
| matchBiomasses | Man page Source code |
| matchGrowth | Man page Source code |
| matchNumbers | Man page Source code |
| matchYields | Man page Source code |
| maturity | Man page Source code |
| maturity<- | Man page |
| melt | Man page |
| metab | Man page Source code |
| metab<- | Man page |
| mizer | Man page |
| mizer-package | Man page |
| mizerEGrowth | Man page Source code |
| mizerERepro | Man page Source code |
| mizerEReproAndGrowth | Man page Source code |
| mizerEncounter | Man page Source code |
| mizerFMort | Man page Source code |
| mizerFMortGear | Man page Source code |
| mizerFeedingLevel | Man page Source code |
| mizerMort | Man page Source code |
| mizerPredMort | Man page Source code |
| mizerPredRate | Man page Source code |
| mizerRDI | Man page Source code |
| mizerRates | Man page Source code |
| mizerResourceMort | Man page Source code |
| needs_upgrading | Man page Source code |
| newCommunityParams | Man page Source code |
| newMultispeciesParams | Man page Source code |
| newSingleSpeciesParams | Man page Source code |
| newTraitParams | Man page Source code |
| noRDD | Man page Source code |
| other_params | Man page Source code |
| other_params<- | Man page |
| plot,MizerParams,missing-method | Man page |
| plot,MizerSim,missing-method | Man page |
| plotBiomass | Man page Source code |
| plotBiomassObservedVsModel | Man page Source code |
| plotDataFrame | Man page Source code |
| plotDiet | Man page Source code |
| plotFMort | Man page Source code |
| plotFeedingLevel | Man page Source code |
| plotGrowthCurves | Man page Source code |
| plotM2 | Man page |
| plotPredMort | Man page Source code |
| plotSpectra | Man page Source code |
| plotYield | Man page Source code |
| plotYieldGear | Man page Source code |
| plotYieldObservedVsModel | Man page Source code |
| plot_spectra | Source code |
| plotlyBiomass | Man page Source code |
| plotlyBiomassObservedVsModel | Man page Source code |
| plotlyFMort | Man page Source code |
| plotlyFeedingLevel | Man page Source code |
| plotlyGrowthCurves | Man page Source code |
| plotlyPredMort | Man page Source code |
| plotlySpectra | Man page Source code |
| plotlyYield | Man page Source code |
| plotlyYieldGear | Man page Source code |
| plotlyYieldObservedVsModel | Man page Source code |
| plotting_functions | Man page |
| power_law_pred_kernel | Man page Source code |
| pred_kernel | Man page Source code |
| pred_kernel<- | Man page |
| project | Man page Source code |
| projectToSteady | Man page Source code |
| project_simple | Man page Source code |
| readParams | Man page Source code |
| reexports | Man page |
| removeComponent | Man page Source code |
| removeSpecies | Man page Source code |
| renameSpecies | Man page Source code |
| repro_prop | Man page Source code |
| repro_prop<- | Man page |
| resource_capacity | Man page Source code |
| resource_capacity<- | Man page |
| resource_constant | Man page Source code |
| resource_dynamics | Man page Source code |
| resource_dynamics<- | Man page |
| resource_level | Man page Source code |
| resource_level<- | Man page |
| resource_logistic | Man page Source code |
| resource_params | Man page Source code |
| resource_params<- | Man page |
| resource_rate | Man page Source code |
| resource_rate<- | Man page |
| resource_semichemostat | Man page Source code |
| saveParams | Man page Source code |
| scaleModel | Man page Source code |
| search_vol | Man page Source code |
| search_vol<- | Man page |
| selectivity | Man page Source code |
| selectivity<- | Man page |
| setBevertonHolt | Man page Source code |
| setColours | Man page Source code |
| setComponent | Man page Source code |
| setExtEncounter | Man page Source code |
| setExtMort | Man page Source code |
| setFishing | Man page Source code |
| setInitialValues | Man page Source code |
| setInteraction | Man page Source code |
| setLinetypes | Man page Source code |
| setMaxIntakeRate | Man page Source code |
| setMetabolicRate | Man page Source code |
| setMetadata | Man page Source code |
| setParams | Man page Source code |
| setPredKernel | Man page Source code |
| setRateFunction | Man page Source code |
| setReproduction | Man page Source code |
| setResource | Man page Source code |
| setRmax | Man page |
| setSearchVolume | Man page Source code |
| set_community_model | Man page Source code |
| set_multispecies_model | Man page Source code |
| set_species_param_default | Man page |
| set_species_param_from_length | Source code |
| set_trait_model | Man page Source code |
| sigmoid_length | Man page Source code |
| sigmoid_weight | Man page Source code |
| species_params | Man page Source code |
| species_params<- | Man page |
| steady | Man page Source code |
| steadySingleSpecies | Man page Source code |
| summary,MizerParams-method | Man page |
| summary,MizerSim-method | Man page |
| summary_functions | Man page |
| truncateSim | Source code |
| truncated_lognormal_pred_kernel | Man page Source code |
| upgradeParams | Man page Source code |
| upgradeSim | Man page Source code |
| validColours | Source code |
| validEffortArray | Source code |
| validEffortVector | Man page Source code |
| validGearParams | Man page Source code |
| validGivenSpeciesParams | Man page Source code |
| validLinetypes | Source code |
| validMizerParams | Source code |
| validParams | Man page Source code |
| validSim | Man page Source code |
| validSpeciesParams | Man page Source code |
| valid_MizerSim | Source code |
| valid_gears_arg | Man page Source code |
| valid_species_arg | Man page Source code |
| w | Man page Source code |
| w2l | Man page Source code |
| w_full | Man page Source code |
