gamma_pruning: Internally used function
In phytools: Phylogenetic Tools for Comparative Biology (and Other Things)
gamma_pruning R Documentation
Internally used function
Description
Internally used function to compute the likelihood under a \Gamma model.
Usage
gamma_pruning(par, nrates=4, tree, x, model=NULL, median=TRUE, ...)
Arguments
par
function parameters.
nrates
number of discrete rate categories.
tree
object of class "phylo".
x
data in the form of a binary matrix.
model
design matrix of fitted model.
median
use the median of each rate category.
...
optional arguments.
Value
A value of the log-likelihood.
Author(s)
Liam Revell liam.revell@umb.edu
References
Revell, L. J. (2024) phytools 2.0: an updated R ecosystem for phylogenetic comparative methods (and other things). PeerJ, 12, e16505.
phytools documentation built on June 22, 2024, 10:39 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
| gamma_pruning | R Documentation |
Internally used function
Description
Internally used function to compute the likelihood under a \Gamma model.
Usage
gamma_pruning(par, nrates=4, tree, x, model=NULL, median=TRUE, ...)
Arguments
par |
function parameters. |
nrates |
number of discrete rate categories. |
tree |
object of class |
x |
data in the form of a binary matrix. |
model |
design matrix of fitted model. |
median |
use the median of each rate category. |
... |
optional arguments. |
Value
A value of the log-likelihood.
Author(s)
Liam Revell liam.revell@umb.edu
References
Revell, L. J. (2024) phytools 2.0: an updated R ecosystem for phylogenetic comparative methods (and other things). PeerJ, 12, e16505.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.