ls.tree: Least squares branch lengths for a given tree
In phytools: Phylogenetic Tools for Comparative Biology (and Other Things)
View source: R/optim.phylo.ls.R
ls.tree R Documentation
Least squares branch lengths for a given tree
Description
Computes the least squares branch lengths conditioned on a topology and distance matrix.
Usage
ls.tree(tree, D)
Arguments
tree
phylogeny.
D
distance matrix.
Details
Generally intended as a function to be used internally by optim.phylo.ls.
Value
A tree with branch lengths.
Author(s)
Liam Revell liam.revell@umb.edu
References
Revell, L. J. (2024) phytools 2.0: an updated R ecosystem for phylogenetic comparative methods (and other things). PeerJ, 12, e16505.
phytools documentation built on June 22, 2024, 10:39 a.m.
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View source: R/optim.phylo.ls.R
| ls.tree | R Documentation |
Least squares branch lengths for a given tree
Description
Computes the least squares branch lengths conditioned on a topology and distance matrix.
Usage
ls.tree(tree, D)
Arguments
tree |
phylogeny. |
D |
distance matrix. |
Details
Generally intended as a function to be used internally by optim.phylo.ls.
Value
A tree with branch lengths.
Author(s)
Liam Revell liam.revell@umb.edu
References
Revell, L. J. (2024) phytools 2.0: an updated R ecosystem for phylogenetic comparative methods (and other things). PeerJ, 12, e16505.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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