reorderSimmap: Reorder edges of a simmap tree

Description Usage Arguments Value Author(s) References See Also

View source: R/utilities.R

Description

Function returns a reordered modified "phylo" object by using reorder.phylo but then sorting the additional elements $mapped.edge and $maps to have the same order as $edge.

Usage

1
reorderSimmap(tree, order="cladewise", index.only=FALSE, ...)

Arguments

tree

a modified object of class "phylo".

order

either "cladewise" or "pruningwise" (see reorder.phylo).

index.only

logical value indicating whether only an index should be returned.

...

other arguments.

Value

A modified object of class "phylo".

Author(s)

Liam Revell [email protected]

References

Revell, L. J. (2012) phytools: An R package for phylogenetic comparative biology (and other things). Methods Ecol. Evol., 3, 217-223.

See Also

reorder.phylo, plotSimmap


phytools documentation built on July 28, 2017, 9:01 a.m.