reorderSimmap: Reorder edges of a '"simmap"' tree

In phytools: Phylogenetic Tools for Comparative Biology (and Other Things)

Reorder edges of a "simmap" tree

Description

Function returns a reordered modified "phylo" object by using reorder.phylo but then sorting the additional elements $mapped.edge and $maps to have the same order as $edge.

Usage

reorderSimmap(tree, order="cladewise", index.only=FALSE, ...)

Arguments

tree	a modified object of class "phylo".
order	"cladewise", "pruningwise", or any other allowable order permitted by reorder.phylo.
index.only	logical value indicating whether only an index should be returned.
...	other arguments.

Value

A modified object of class "phylo".

Author(s)

Liam Revell [e-mail]

References

Revell, L. J. (2024) phytools 2.0: an updated R ecosystem for phylogenetic comparative methods (and other things). PeerJ, 12, e16505.

See Also

reorder.phylo, plotSimmap

phytools documentation built on April 3, 2025, 10:43 p.m.