setMap: Set color map for various phylogenetic objects of classes

View source: R/densityMap.R

setMapR Documentation

Set color map for various phylogenetic objects of classes

Description

Function to change the color map (ramp) in an object of class "contMap", "densityMap", "phyloScattergram", or "multirateBM_plot".

Usage

setMap(x, ...)
## S3 method for class 'contMap'
setMap(x, ...)
## S3 method for class 'densityMap'
setMap(x, ...)
## S3 method for class 'phyloScattergram'
setMap(x, ...)
## S3 method for class 'multirateBM_plot'
setMap(x, ...)

Arguments

x

an object of class "contMap", "densityMap", "phyloScattergram", or "multirateBM_plot".

...

arguments to be passed to colorRampPalette. Also, the argument invert which (if invert=TRUE) will just flip the current color ramp.

Value

An object of class "contMap", "densityMap", "phyloScattergram", or "multirateBM_plot".

Author(s)

Liam Revell liam.revell@umb.edu

References

Revell, L. J. (2012) phytools: An R package for phylogenetic comparative biology (and other things). Methods Ecol. Evol., 3, 217-223.

Revell, L. J. 2013. Two new graphical methods for mapping trait evolution on phylogenies. Methods in Ecology and Evolution, 4, 754-759.

See Also

contMap, densityMap, multirateBM


phytools documentation built on Sept. 2, 2022, 1:06 a.m.