vcvPhylo: Calculates cophenetic (i.e., phylogenetic VCV) matrix
In phytools: Phylogenetic Tools for Comparative Biology (and Other Things)
Description
Usage
Arguments
Value
Author(s)
References
Description
This function returns a so-called phylogenetic variance covariance matrix (e.g., see vcv.phylo), but (optionally) including ancestral nodes and under different evolutionary models.
Usage
1
Arguments
tree
object of class "phylo".
anc.nodes
logical value indicating whether or not to include ancestral nodes.
...
optional arguments including internal (synonym of anc.nodes) and model (can be "BM", "OU", or "lambda".
Value
A matrix.
Author(s)
Liam Revell [email protected]
References
Revell, L. J. (2012) phytools: An R package for phylogenetic comparative biology (and other things). Methods Ecol. Evol., 3, 217-223.
phytools documentation built on Nov. 17, 2017, 6:24 a.m.
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Description Usage Arguments Value Author(s) References
Description
This function returns a so-called phylogenetic variance covariance matrix (e.g., see vcv.phylo), but (optionally) including ancestral nodes and under different evolutionary models.
Usage
1 |
Arguments
tree |
object of class |
anc.nodes |
logical value indicating whether or not to include ancestral nodes. |
... |
optional arguments including |
Value
A matrix.
Author(s)
Liam Revell [email protected]
References
Revell, L. J. (2012) phytools: An R package for phylogenetic comparative biology (and other things). Methods Ecol. Evol., 3, 217-223.
phytools documentation built on Nov. 17, 2017, 6:24 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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