vcvPhylo: Calculates cophenetic (i.e., phylogenetic VCV) matrix
In phytools: Phylogenetic Tools for Comparative Biology (and Other Things)
Description
Usage
Arguments
Value
Author(s)
References
Description
This function returns a so-called phylogenetic variance covariance matrix (e.g., see vcv.phylo), but (optionally) including ancestral nodes and under different evolutionary models.
Usage
1
Arguments
tree
object of class "phylo".
anc.nodes
logical value indicating whether or not to include ancestral nodes.
...
optional arguments including internal (synonym of anc.nodes) and model (can be "BM", "OU", or "lambda".
Value
A matrix.
Author(s)
Liam Revell liam.revell@umb.edu
References
Revell, L. J. (2012) phytools: An R package for phylogenetic comparative biology (and other things). Methods Ecol. Evol., 3, 217-223.
phytools documentation built on July 28, 2017, 9:01 a.m.
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Description Usage Arguments Value Author(s) References
Description
This function returns a so-called phylogenetic variance covariance matrix (e.g., see vcv.phylo), but (optionally) including ancestral nodes and under different evolutionary models.
Usage
1 |
Arguments
tree |
object of class |
anc.nodes |
logical value indicating whether or not to include ancestral nodes. |
... |
optional arguments including |
Value
A matrix.
Author(s)
Liam Revell liam.revell@umb.edu
References
Revell, L. J. (2012) phytools: An R package for phylogenetic comparative biology (and other things). Methods Ecol. Evol., 3, 217-223.
R Package Documentation
Browse R Packages
We want your feedback!
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