plot.track: Make browser-like plot in rphast

In rphast: Interface to 'PHAST' Software for Comparative Genomics

Description

Make browser-like plot in rphast

Usage

## S3 method for class 'track'
plot(x, doLabels = TRUE, cex.axis = 1, cex.labels = 1,
  cex.shortLabels = 0.75, relWigSize = 5, relMsaSize = 5, xlim = NULL,
  xlab = "coord", ylab = "", blankSpace = 0.25, axisDigits = 3,
  labelSpace = min(length(x) * 0.05, 0.25), belowLabelSpace = 0.2,
  lmar = 4, ...)

Arguments

x	a list of tracks, created by the as.track.wig or as.track.feat
doLabels	Logical. Whether to plot the label above each plot. Will be recycled to the length of x. Does not affect printing of shortLabels.
cex.axis	The character expansion factor for axis annotations.
cex.labels	The character expansion factor for the labels
cex.shortLabels	The character expansion factor for the shortLabels
relWigSize	The relative size of wig plots compared to feature plots
relMsaSize	The relative size of msa plots compared to feature plots
xlim	The range of the x coordinate to be plotted. If NULL (the default), will use the entire range represented in the resultList.
xlab	The label for the x axis
ylab	The label for the y axis
blankSpace	The amount of vertical blank space between each plot. This should be a single numeric value between 0 and 1, representing the total fraction of the plot occupied by blank space.
axisDigits	The number of digits to use on the y-axis for wig plots.
labelSpace	The total fraction of vertical space given to plot labels.
belowLabelSpace	The amount of space between a label and the plot it corresponds to, in fractions of a character width.
lmar	The size of the left margin (in number of lines)
...	Other options to be passed to plot. See par.
labels	Labels to appear directly above each plot.

Author(s)

Melissa J. Hubisz

See Also

plotPhast, which may be easier to use but less flexible

rphast documentation built on May 1, 2019, 9:26 p.m.