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inst/examples/add-UTRs-feat.R
In rphast: Interface to 'PHAST' Software for Comparative Genomics
exampleArchive <- system.file("extdata", "examples.zip", package="rphast")
featFile <- "gencode.ENr334.gp"
unzip(exampleArchive, featFile)
f <- read.feat(featFile)
table(f$feature)
coverage.feat(f[f$feature=="CDS",])
coverage.feat(f[f$feature=="exon",])
f <- add.UTRs.feat(f)
table(f$feature)
coverage.feat(f[f$feature=="3'UTR",])
coverage.feat(f[f$feature=="5'UTR",])
unlink(featFile)
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rphast documentation built on May 1, 2019, 9:26 p.m.
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exampleArchive <- system.file("extdata", "examples.zip", package="rphast")
featFile <- "gencode.ENr334.gp"
unzip(exampleArchive, featFile)
f <- read.feat(featFile)
table(f$feature)
coverage.feat(f[f$feature=="CDS",])
coverage.feat(f[f$feature=="exon",])
f <- add.UTRs.feat(f)
table(f$feature)
coverage.feat(f[f$feature=="3'UTR",])
coverage.feat(f[f$feature=="5'UTR",])
unlink(featFile)
Try the rphast package in your browser
Any scripts or data that you put into this service are public.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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