API for vanddraabe
Identification and Statistical Analysis of Conserved Waters Near Proteins
| Global functions | |
|---|---|
| AlignOverlap | Man page |
| BoundWaterEnvPlots | Man page |
| BoundWaterEnvSummaryPlot | Man page |
| BoundWaterEnvironment | Man page |
| BoundWaterEnvironment.interact | Man page |
| BoundWaterEnvironment.quality | Man page |
| BvalueBarplot | Man page |
| BvalueBarplot.summ | Man page |
| CalcAlignOverlap | Man page |
| CleanProteinStructures | Man page |
| ClusterSummaryPlots | Man page |
| ClusterWaters | Man page |
| ClusterWaters.MDS | Man page |
| ConservationPlot | Man page |
| ConservationSet | Man page |
| ConservedWaterStats | Man page |
| ConservedWaters | Man page |
| ConservedWaters.MDS | Man page |
| CreatePyMOLscript | Man page |
| DetermineChainsOfInterest | Man page |
| ExtractFileTimeStamp | Man page |
| ExtractPDBids | Man page |
| FileTimeStamp | Man page |
| FreeSASA.diff | Man page |
| FreeSASAcheck | Man page |
| HasXWaters | Man page |
| HydrophilicityEvaluation | Man page |
| HydrophilicityTable | Man page |
| MobNormBvalEvalPlots | Man page |
| Mobility | Man page |
| MobilityBarplot | Man page |
| MobilityBarplot.summ | Man page |
| Nearby | Man page |
| NormalizedBvalue | Man page |
| OccupancyBarplot | Man page |
| OccupancyBarplot.summ | Man page |
| PDB.1ecd | Man page |
| PDB.5rxn | Man page |
| ProtHetWatIndices | Man page |
| RemoveHydrogenAtoms | Man page |
| RemoveModeledAtoms | Man page |
| RemoveOoR.b | Man page |
| RemoveOoR.o | Man page |
| RescaleValues | Man page |
| RetainChainsOfInterest | Man page |
| RetainWatersWithinX | Man page |
| ReturnPDBfullPath | Man page |
| StandardizeAsparticAcidNames | Man page |
| StandardizeCysteineNames | Man page |
| StandardizeGlutamicAcidNames | Man page |
| StandardizeHistidineNames | Man page |
| StandardizeLysineNames | Man page |
| TimeSpan | Man page |
| UniqueAtomHashes | Man page |
| aaStandardizeNames | Man page |
| calcAtomClassHydrophilicity | Man page |
| calcAtomHydrationEstimate | Man page |
| calcBvalue | Man page |
| calcNearbyHydrationFraction | Man page |
| calcNumHydrogenBonds | Man page |
| check.cluster.method | Man page |
| colorPalettes | Man page |
| getAtomTypeCounts | Man page |
| getProtAtomsNearWater | Man page |
| getRCSBdata | Man page |
| getResTypeCounts | Man page |
| getResidueData | Man page |
| nBvalueBarplot | Man page |
| names.backbone.atoms | Man page |
| names.polar.atoms | Man page |
| names.res.AtomTypes | Man page |
| names.resATs.carb.sulf | Man page |
| names.resATs.nitro.neut | Man page |
| names.resATs.nitro.pos | Man page |
| names.resATs.oxy.neg | Man page |
| names.resATs.oxy.neut | Man page |
| names.residues | Man page |
| names.sidechain.atoms | Man page |
| names.waters | Man page |
| normBvalueBarplot.summ | Man page |
| openxlsxCellStyles | Man page |
| oxAlignOverlapSheet | Man page |
| oxClusterStatsSheet | Man page |
| oxClusterSummarySheet | Man page |
| oxInitWaterDataSheet | Man page |
| oxPDBcleanedSummarySheet | Man page |
| oxPlainDataSheet | Man page |
| oxRCSBinfoSheet | Man page |
| oxWaterOccurrenceSheet | Man page |
| res2xyz | Man page |
| resAtomType2AtomClass | Man page |
| thrombin.1hai | Man page |
| thrombin10.PDBs.align | Man page |
| vanddraabe | Man page |
| vanddraabe-package | Man page |
| write.basic.pdb | Man page |
| write.conservedWaters.pdb | Man page |
