build.variant.specification: build.variant.specification

In varitas: Variant Calling in Targeted Analysis Sequencing Data

Description

Build data frame with paths to variant files.

Usage

build.variant.specification(sample.ids, project.directory)

Arguments

sample.ids	Vector of sample IDs. Must match subdirectories in project.directory.
project.directory	Path to directory where sample subdirectories

Details

Parses through sample IDs in a project directory and returns paths to variant files based on (theoretical) file name patterns. Useful for testing, or for entering the pipeline at non-traditional stages.

Value

Data frame with paths to variant files.

varitas documentation built on Nov. 14, 2020, 1:07 a.m.