get.varitas.options: Return VariTAS settings
In varitas: Variant Calling in Targeted Analysis Sequencing Data
Description
Usage
Arguments
Value
Examples
View source: R/get.varitas.options.R
Description
Return VariTAS settings
Usage
1
get.varitas.options(option.name = NULL, nesting.character = "\\.")
Arguments
option.name
Optional name of option. If no name is supplied, the full list of VariTAS options will be provided.
nesting.character
String giving Regex pattern of nesting indication string. Defaults to '\.'
Value
varitas.options list specifying VariTAS options
Examples
1
2
reference.build <- get.varitas.options('reference_build');
mutect.filters <- get.varitas.options('filters.mutect');
varitas documentation built on Nov. 14, 2020, 1:07 a.m.
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Description Usage Arguments Value Examples
View source: R/get.varitas.options.R
Description
Return VariTAS settings
Usage
1 | get.varitas.options(option.name = NULL, nesting.character = "\\.")
|
Arguments
option.name |
Optional name of option. If no name is supplied, the full list of VariTAS options will be provided. |
nesting.character |
String giving Regex pattern of nesting indication string. Defaults to '\.' |
Value
varitas.options list specifying VariTAS options
Examples
1 2 | reference.build <- get.varitas.options('reference_build');
mutect.filters <- get.varitas.options('filters.mutect');
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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