fix.varscan.af: fix.varscan.af
In varitas: Variant Calling in Targeted Analysis Sequencing Data
View source: R/helper_functions.R
Description
VarScan does not output allele frequencies, so this script calculates them from the
DP (depth) and AD (variant allele depth) values and adds them to the annotated vcf.
Usage
1
fix.varscan.af(variant.specification)
Arguments
variant.specification
Data frame of variant file information
varitas documentation built on Nov. 14, 2020, 1:07 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
View source: R/helper_functions.R
Description
VarScan does not output allele frequencies, so this script calculates them from the DP (depth) and AD (variant allele depth) values and adds them to the annotated vcf.
Usage
1 | fix.varscan.af(variant.specification)
|
Arguments
variant.specification |
Data frame of variant file information |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.