fix.lofreq.af: fix.lofreq.af
In varitas: Variant Calling in Targeted Analysis Sequencing Data
View source: R/helper_functions.R
Description
LoFreq also does not output allele frequencies, so this script calculates them from the
DP (depth) and AD (variant allele depth) values–which are also not output nicely–
and adds them to the annotated vcf.
Usage
1
fix.lofreq.af(variant.specification)
Arguments
variant.specification
Data frame of variant file information
varitas documentation built on Nov. 14, 2020, 1:07 a.m.
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View source: R/helper_functions.R
Description
LoFreq also does not output allele frequencies, so this script calculates them from the DP (depth) and AD (variant allele depth) values–which are also not output nicely– and adds them to the annotated vcf.
Usage
1 | fix.lofreq.af(variant.specification)
|
Arguments
variant.specification |
Data frame of variant file information |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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